atrium.kyleharrington.com

A Python script to launch napari with real-time webcam filters for video conferencing. Follow pyvirtualcam install instructions first.

Visualize the CartPole game optimized using SARSA in Napari.

Generates synthetic cryo-electron tomography data using Polnet, including protein placements and membrane simulations

Import particle picks from CSV files into a Copick project

A FastAPI server that extends copick-server to provide visualization of tomogram samples.

Renders orthogonal views of spliced 3D volumes, combining synthetic and experimental CryoET data.

Optimize a GRN to produce antiphase oscillations among 4 species.

Visualize the Mandelbrot set interactively using napari.

Visualize the Mandelbrot set interactively using napari.

Updates an atrium configuration in a repository for GH pages

A Python script to generate and visualize 3D meshes from scikit-image blobs, with export to OBJ, PLY, and Neuroglancer Precomputed formats.

A Python script to generate and visualize 3D meshes from scikit-image blobs, with export to OBJ, PLY, and Neuroglancer Precomputed formats.

A Python script to generate and visualize 3D meshes from scikit-image blobs, with export to OME-NGFF Zarr format with Neuroglancer Precomputed meshes

A Python script to view precomputed mesh data using Neuroglancer with webdriver

A Python script to view precomputed mesh data in napari with proper multiscale mesh rendering

A Python script to visualize all LOD levels of precomputed mesh data simultaneously in napari

A Python script to view precomputed mesh data in napari with specific LOD levels

A Python script to view precomputed mesh data in napari with proper multiscale mesh rendering that automatically scales meshes to match image data

A Python script to view precomputed multiscale mesh data in Neuroglancer

Open a multiscale zarr with napari and use multiscale tiled loading

Open a multiscale zarr with napari and use multiscale tiled loading

Open a multiscale zarr with napari and use multiscale tiled loading

A simple Python script to launch napari.

A simple Python script to launch napari.

A simple Python script to launch napari.

A napari-based viewer for browsing PNS files with widget controls

Processes a directory of PDB files to create corresponding PNS files using pure Python

A 3D swarm simulation using energy dynamics, collision handling, and reproduction.

A 3D swarm simulation using energy dynamics, collision handling, and reproduction.

A 3D swarm simulation with agents using mutation and crossover for behavior control, including energy dynamics and reproduction.

A 3D swarm simulation using energy dynamics, collision handling, and reproduction.

Implements a minimal lambda chemistry and plots reproducer frequency over time.

Simulates Langton's Ant using napari for visualization.