atrium.kyleharrington.com

A Python script to generate and visualize 3D meshes from scikit-image blobs, with export to OBJ, PLY, and Neuroglancer Precomputed formats.

A Python script to generate and visualize 3D meshes from scikit-image blobs, with export to OME-NGFF Zarr format with Neuroglancer Precomputed meshes

A Python script to view precomputed mesh data in napari with proper multiscale mesh rendering

A Python script to view precomputed mesh data in napari with specific LOD levels

A Python script to view precomputed mesh data using Neuroglancer with webdriver

A Python script to visualize all LOD levels of precomputed mesh data simultaneously in napari

A Python script to view precomputed multiscale mesh data in Neuroglancer

A Python script to view precomputed mesh data in napari with proper coordinate alignment

A Python script to generate and visualize 3D meshes from scikit-image blobs, with export to OBJ, PLY, and Neuroglancer Precomputed formats.

A 3D swarm simulation using energy dynamics, collision handling, and reproduction.

Implements a minimal lambda chemistry and plots reproducer frequency over time.

Simulates Langton's Ant using napari for visualization.

Demonstration tool for visualizing the glass petri dish detection used in physarum zarr conversion

Extract and compress physarum petri dish images from time-series into efficient Zarr format with optimized glass dish detection

A simple FastAPI server for sharing Zarr arrays over HTTP with CORS support

A simple FastAPI server for sharing Zarr arrays over HTTP with CORS support

Optimize a GRN to produce antiphase oscillations among 4 species.

Visualize the CartPole game optimized using SARSA in Napari.

A Python script to launch napari with real-time webcam filters for video conferencing. Follow pyvirtualcam install instructions first.

Updates an atrium configuration in a repository for GH pages

Generates synthetic cryo-electron tomography data using Polnet, including protein placements and membrane simulations

Renders orthogonal views of spliced 3D volumes, combining synthetic and experimental CryoET data.

A FastAPI server that extends copick-server to provide visualization of tomogram samples.

Import particle picks from CSV files into a Copick project

Visualize the Mandelbrot set interactively using napari.

A simple Python script to launch napari.

A simple Python script to launch napari.

A napari-based viewer for browsing PNS files with widget controls

A simple Python script to launch napari.

Open a multiscale zarr with napari and use multiscale tiled loading

Processes a directory of PDB files to create corresponding PNS files using pure Python