atrium.kyleharrington.com
a collection of executable scripts for science, ai, and more
a collection of executable scripts for science, ai, and more
A Python script to launch napari with real-time webcam filters for video conferencing. Follow pyvirtualcam install instructions first.
Extract and compress physarum petri dish images from time-series into efficient Zarr format with optimized glass dish detection
Demonstration tool for visualizing the glass petri dish detection used in physarum zarr conversion
A simple FastAPI server for sharing Zarr arrays over HTTP with CORS support
A simple FastAPI server for sharing Zarr arrays over HTTP with CORS support
A Python script to generate and visualize 3D meshes from scikit-image blobs, with export to OME-NGFF Zarr format with Neuroglancer Precomputed meshes
A Python script to generate and visualize 3D meshes from scikit-image blobs, with export to OBJ, PLY, and Neuroglancer Precomputed formats.
A Python script to generate and visualize 3D meshes from scikit-image blobs, with export to OBJ, PLY, and Neuroglancer Precomputed formats.
A Python script to view precomputed multiscale mesh data in Neuroglancer
A Python script to view precomputed mesh data in napari with proper coordinate alignment
A Python script to view precomputed mesh data in napari with proper multiscale mesh rendering
A Python script to view precomputed mesh data in napari with specific LOD levels
A Python script to visualize all LOD levels of precomputed mesh data simultaneously in napari
A Python script to view precomputed mesh data using Neuroglancer with webdriver
A FastAPI server that extends copick-server to provide visualization of tomogram samples.
Import particle picks from CSV files into a Copick project
Generates synthetic cryo-electron tomography data using Polnet, including protein placements and membrane simulations
Renders orthogonal views of spliced 3D volumes, combining synthetic and experimental CryoET data.
Updates an atrium configuration in a repository for GH pages
Processes a directory of PDB files to create corresponding PNS files using pure Python
Implements a minimal lambda chemistry and plots reproducer frequency over time.
A 3D swarm simulation using energy dynamics, collision handling, and reproduction.
