atrium.kyleharrington.com

Extract and compress physarum petri dish images from time-series into efficient Zarr format with optimized glass dish detection

Demonstration tool for visualizing the glass petri dish detection used in physarum zarr conversion

Visualize the Mandelbrot set interactively using napari.

Optimize a GRN to produce antiphase oscillations among 4 species.

Updates an atrium configuration in a repository for GH pages

Processes a directory of PDB files to create corresponding PNS files using pure Python

Generates synthetic cryo-electron tomography data using Polnet, including protein placements and membrane simulations

Import particle picks from CSV files into a Copick project

Renders orthogonal views of spliced 3D volumes, combining synthetic and experimental CryoET data.

A FastAPI server that extends copick-server to provide visualization of tomogram samples.

Simulates Langton's Ant using napari for visualization.

Implements a minimal lambda chemistry and plots reproducer frequency over time.

A 3D swarm simulation using energy dynamics, collision handling, and reproduction.

Visualize the CartPole game optimized using SARSA in Napari.

A simple FastAPI server for sharing Zarr arrays over HTTP with CORS support

A simple FastAPI server for sharing Zarr arrays over HTTP with CORS support

A Python script to view precomputed mesh data in napari with proper coordinate alignment

A Python script to view precomputed multiscale mesh data in Neuroglancer

A Python script to generate and visualize 3D meshes from scikit-image blobs, with export to OBJ, PLY, and Neuroglancer Precomputed formats.

A Python script to visualize all LOD levels of precomputed mesh data simultaneously in napari

A Python script to view precomputed mesh data in napari with specific LOD levels

A Python script to view precomputed mesh data using Neuroglancer with webdriver

A Python script to view precomputed mesh data in napari with proper multiscale mesh rendering

A Python script to generate and visualize 3D meshes from scikit-image blobs, with export to OBJ, PLY, and Neuroglancer Precomputed formats.

A Python script to generate and visualize 3D meshes from scikit-image blobs, with export to OME-NGFF Zarr format with Neuroglancer Precomputed meshes

Stream one Zebrahub timepoint into ndv with a camera shared by every lodstone-zebrahub entry

A simple Python script to launch napari.

A simple Python script to launch napari.

A napari-based viewer for browsing PNS files with widget controls

A simple Python script to launch napari.

Stream one Zebrahub timepoint into SceneX with a camera shared by every lodstone-zebrahub entry

Stream one Zebrahub timepoint into napari with a camera shared by every lodstone-zebrahub entry

Open a multiscale zarr with napari and use multiscale tiled loading

A Python script to launch napari with real-time webcam filters for video conferencing. Follow pyvirtualcam install instructions first.